Over a Decade of recA and tly Gene Sequence Typing of the Skin Bacterium Propionibacterium acnes: What Have We Learnt?
Identifieur interne : 000313 ( Main/Exploration ); précédent : 000312; suivant : 000314Over a Decade of recA and tly Gene Sequence Typing of the Skin Bacterium Propionibacterium acnes: What Have We Learnt?
Auteurs : Andrew Mcdowell [Royaume-Uni]Source :
- Microorganisms [ 2076-2607 ] ; 2017.
Abstract
The Gram-positive, anaerobic bacterium Propionibacterium acnes forms part of the normal microbiota on human skin and mucosal surfaces. While normally associated with skin health, P. acnes is also an opportunistic pathogen linked with a range of human infections and clinical conditions. Over the last decade, our knowledge of the intraspecies phylogenetics and taxonomy of this bacterium has increased tremendously due to the introduction of DNA typing schemes based on single and multiple gene loci, as well as whole genomes. Furthermore, this work has led to the identification of specific lineages associated with skin health and human disease. In this review we will look back at the introduction of DNA sequence typing of P. acnes based on recA and tly loci, and then describe how these methods provided a basic understanding of the population genetic structure of the bacterium, and even helped characterize the grapevine-associated lineage of P. acnes, known as P. acnes type Zappe, which appears to have undergone a host switch from humans-to-plants. Particular limitations of recA and tly sequence typing will also be presented, as well as a detailed discussion of more recent, higher resolution, DNA-based methods to type P. acnes and investigate its evolutionary history in greater detail.
DOI: 10.3390/microorganisms6010001
PubMed: 29267255
PubMed Central: PMC5874615
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While normally associated with skin health, <i>P. acnes</i> is also an opportunistic pathogen linked with a range of human infections and clinical conditions. Over the last decade, our knowledge of the intraspecies phylogenetics and taxonomy of this bacterium has increased tremendously due to the introduction of DNA typing schemes based on single and multiple gene loci, as well as whole genomes. Furthermore, this work has led to the identification of specific lineages associated with skin health and human disease. In this review we will look back at the introduction of DNA sequence typing of <i>P. acnes</i> based on <i>recA</i> and <i>tly</i> loci, and then describe how these methods provided a basic understanding of the population genetic structure of the bacterium, and even helped characterize the grapevine-associated lineage of <i>P. acnes</i>, known as <i>P. acnes</i> type Zappe, which appears to have undergone a host switch from humans-to-plants. Particular limitations of <i>recA</i> and <i>tly</i> sequence typing will also be presented, as well as a detailed discussion of more recent, higher resolution, DNA-based methods to type <i>P. acnes</i> and investigate its evolutionary history in greater detail.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29267255</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2076-2607</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>Dec</Month><Day>21</Day></PubDate></JournalIssue><Title>Microorganisms</Title><ISOAbbreviation>Microorganisms</ISOAbbreviation></Journal><ArticleTitle>Over a Decade of recA and tly Gene Sequence Typing of the Skin Bacterium Propionibacterium acnes: What Have We Learnt?</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E1</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/microorganisms6010001</ELocationID><Abstract><AbstractText>The Gram-positive, anaerobic bacterium <i>Propionibacterium acnes</i> forms part of the normal microbiota on human skin and mucosal surfaces. While normally associated with skin health, <i>P. acnes</i> is also an opportunistic pathogen linked with a range of human infections and clinical conditions. Over the last decade, our knowledge of the intraspecies phylogenetics and taxonomy of this bacterium has increased tremendously due to the introduction of DNA typing schemes based on single and multiple gene loci, as well as whole genomes. Furthermore, this work has led to the identification of specific lineages associated with skin health and human disease. In this review we will look back at the introduction of DNA sequence typing of <i>P. acnes</i> based on <i>recA</i> and <i>tly</i> loci, and then describe how these methods provided a basic understanding of the population genetic structure of the bacterium, and even helped characterize the grapevine-associated lineage of <i>P. acnes</i>, known as <i>P. acnes</i> type Zappe, which appears to have undergone a host switch from humans-to-plants. Particular limitations of <i>recA</i> and <i>tly</i> sequence typing will also be presented, as well as a detailed discussion of more recent, higher resolution, DNA-based methods to type <i>P. acnes</i> and investigate its evolutionary history in greater detail.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>McDowell</LastName><ForeName>Andrew</ForeName><Initials>A</Initials><Identifier Source="ORCID">0000-0002-9649-0504</Identifier><AffiliationInfo><Affiliation>Northern Ireland Centre for Stratified Medicine, School of Biomedical Sciences, Ulster University, Londonderry BT47 6SB, UK. a.mcdowell@ulster.ac.uk.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>12</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Microorganisms</MedlineTA><NlmUniqueID>101625893</NlmUniqueID><ISSNLinking>2076-2607</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">MLST</Keyword><Keyword MajorTopicYN="N">MLVA</Keyword><Keyword MajorTopicYN="N">Propionibacterium acnes</Keyword><Keyword MajorTopicYN="N">SLST</Keyword><Keyword MajorTopicYN="N">horizontal gene transfer</Keyword><Keyword MajorTopicYN="N">multiplex PCR</Keyword><Keyword MajorTopicYN="N">phylogenetics</Keyword><Keyword MajorTopicYN="N">recA</Keyword><Keyword MajorTopicYN="N">ribotyping</Keyword><Keyword MajorTopicYN="N">tly</Keyword><Keyword MajorTopicYN="N">typing</Keyword><Keyword MajorTopicYN="N">whole genome sequencing</Keyword></KeywordList><CoiStatement>The author declares no conflict of 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